If you already have your SSL Certificate and just need to install it, see
IBM Websphere SSL Certificate Installation.
How to generate a CSR for IBM Websphere
The first step is to create a keystore, a file that contains the certificates and private key. You will create the keystore with IBM's Key Management Utility, which comes installed with WebSphere:
In the IBM Key Management Utility, click on Key Database File and then New.
Click the Browse button. Go to
C:\Program Files\IBM\WebSphere\AppServer\profiles\default\etc or to a different location where you want to store your keystore file.
Type a Key Label, Common Name, Organization, Locality, State, and select a Country. Select 2048 for Key Size. For the common name, enter the fully qualified domain name for the site you are securing (e.g., www.yourdomain.com). If you are generating a Websphere CSR for a Wildcard SSL Certificate, make sure your common name starts with an asterisk (e.g. *.example.com).
You can now open that file in a text editor and paste it to order your SSL certificate from DigiCert.
Make sure to remember where your your_domain.jks file is, as it will be required later when installing your SSL certificate in IBM Websphere.
See IBM Websphere SSL Certificate Installation.